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Sampling procedure for fruit trees – laboratory disease determination (fungal & bacterial pathogens)

{Tool} Sampling procedure for fruit trees – laboratory disease determination (fungal & bacterial pathogens). Creator(s): Vávra, Radek; Lišková, Petra and Kupková, Jana. Issuing Organisation(s): Research and Breeding Institute of Pomology Holovousy Ltd.. (2025)

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Summary

This practice abstract outlines how to correctly sample fruit tree tissues for laboratory determination of fungal and bacterial pathogens, addressing the challenge that many fruit tree diseases—such as bacterial canker, cherry leaf spot, and shot hole—produce overlapping visual symptoms, making field diagnosis unreliable. It explains how proper sampling of leaves, shoots, fruits, branches, and buds ensures accurate pathogen identification, which is essential for effective disease management. The guidelines describe how to collect, handle, and package samples so that tissues remain alive, moist, and suitable for analysis, enabling growers to obtain precise diagnoses and implement targeted control strategies to protect orchard health and yield.


EPrint Type:Practice tool
Teaser:Accurate disease diagnosis starts with correct sampling.
What problem does the tool address?:Fruit trees can be affected by different diseases with similar symptoms, which makes an accurate visual identification difficult. For example, cherries (Prunus avium) are affected by several diseases including Bacterial canker (Pseudomonas ssp.), Cherry leaf spot (Blumeriella jaapii), and Shot hole disease (Stigmina carpophila), which have overlapping symptoms.
What solution does the tool offer?:Laboratory analysis provides reliable pathogen identification in fruit orchards. Proper sampling is crucial for an accurate diagnosis and effective disease management.
Country:Czech Republic
Type of Practice Tool:Practice abstracts
Agrovoc keywords:
Language
Value
URI
English
temperate fruits
http://aims.fao.org/aos/agrovoc/c_7655
English
plant protection
http://aims.fao.org/aos/agrovoc/c_5978
English
plant disease control
http://aims.fao.org/aos/agrovoc/c_5960
Subjects: Crop husbandry > Production systems > Fruit and berries
Research affiliation: Czech Republic > Other institutions Czech republic
European Union > Organic Farm Knowledge
European Union > Horizon Europe > InnOBreed
Horizon Europe or H2020 Grant Agreement Number:101061028
Related Links:https://organic-farmknowledge.org/tool/56830, https://organic-farmknowledge.org/tool/46031
Deposited By: Dietemann, Lauren
ID Code:56830
Deposited On:11 Feb 2026 14:12
Last Modified:11 Feb 2026 14:12
Document Language:English
Status:Published

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