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How to quantify mycorrhization using absolute qPCR - A step-by-step tutorial (Root2Res Video)

Kayan, Carmen; Bodenhausen, Natacha; Romero, Ignacio and Gallmann, Nina (2025) How to quantify mycorrhization using absolute qPCR - A step-by-step tutorial (Root2Res Video). Research Institut of Organic Agriculture FiBL .

[thumbnail of video.php_y=https_%2F%2Fwww.youtube.com%2Fwatch_v=blBlxnjtvCc] Video (MPEG) - Published Version - English
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Document available online at: https://www.youtube.com/watch?v=blBlxnjtvCc


Summary

This video provides a step-by-step tutorial on quantifying mycorrhization using absolute qPCR. The method enables precise quantification of arbuscular mycorrhizal fungi in plant roots by measuring target DNA copy numbers against a standard curve.
The tutorial demonstrates how absolute qPCR is applied within the Root2Resilience project, from sample preparation and DNA quantification to qPCR setup and data interpretation. This approach supports the accurate assessment of root colonisation by mycorrhizal fungi and contributes to a better understanding of plant–microbe interactions in crop systems.


EPrint Type:Video
Keywords:plant breeding, crop production, microbiome, Abacus, FiBL1019502, Root2Res
Agrovoc keywords:
Language
Value
URI
English
plant breeding
http://aims.fao.org/aos/agrovoc/c_5956
English
genetics
http://aims.fao.org/aos/agrovoc/c_3222
Subjects: Crop husbandry > Breeding, genetics and propagation
Research affiliation: European Union > Horizon Europe > Roots2Res
Switzerland > FiBL - Research Institute of Organic Agriculture Switzerland > Crops > Seeds and breeding > Plant breeding
Switzerland > FiBL - Research Institute of Organic Agriculture Switzerland > Sustainability > Microbiom
Switzerland > FiBL - Research Institute of Organic Agriculture Switzerland > Knowledge exchange > Videos
Horizon Europe or H2020 Grant Agreement Number:101060124
Related Links:https://root2res.eu/, https://www.fibl.org/en/themes/projectdatabase/projectitem/project/2149
Deposited By: Forschungsinstitut für biologischen Landbau, FiBL
ID Code:56559
Deposited On:07 Jan 2026 10:11
Last Modified:07 Jan 2026 10:11
Document Language:English
Status:Published

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